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Skip to Main Content Journals Physical Review Letters Physical Review X Reviews of Modern Physics Physical Review A Physical Review B Physical Review C Physical Review D Physical Review Research Physical Review Accelerators and Beams Physical Review Applied Physical Review Fluids Physical Review Materials Physical Review Physics Education Research Physical Review Physical Review (Series I) Physics Physique Fizika Physics Magazine Help/Feedback Search/Article Lookup Log in covering statistical, nonlinear, biological, and soft matter physics Highlights Recent Accepted Collections Authors Referees Search Press About EDITORS' SUGGESTION Identifying knot types of polymer conformations by machine learning Olafs Vandans, Kaiyuan Yang, Zhongtao Wu, and Liang Dai Phys. Rev. E 101 , 022502 (2020) Identifying if two knots are similar is an open problem that cuts across several disciplines from mathematics to physical sciences; the main challenge is that the knot type is a global property that cannot be determined by looking only locally. In this paper, the authors apply supervised learning techniques to the knot recognition problem in polymers, showing what artificial neural networks can do to address it. EDITORS' SUGGESTION Translational nucleosome positioning: A computational study J. Neipel, G. Brandani, and H. Schiessel Phys. Rev. E 101 , 022405 (2020) How to predict the positions of nucleosomes on DNA is an important problem. The authors show that a simple coarse-grained model of DNA is unable to account for all aspects of the positioning, and they propose a model that assumes the elasticity of DNA changes when it is part of the nucleosome. The new approach shows excellent agreement with previously published experimental work. EDITORS' SUGGESTION Lattice Boltzmann model for weakly compressible flows Praveen Kumar Kolluru, Mohammad Atif, Manjusha Namburi, and Santosh Ansumali Phys. Rev. E 101 , 013309 (2020) The authors propose an energy-conserving multispeed lattice Boltzmann model relevant for acoustic phenomena and weakly compressible flows. By providing simulations of several test cases they demonstrate that the model gives impressive results, including for turbulent flows, even in the presence of objects. EDITORS' SUGGESTION Adsorption anomalies in a two-dimensional model of cluster-forming systems E. Bildanau, J. Pękalski, V. Vikhrenko, and A. Ciach Phys. Rev. E 101 , 012801 (2020) Monte Carlo simulations are used to study a two-dimensional lattice model of particles interacting through short-range attraction and long-range repulsion. Adsorption of particles on a boundary line and the distribution of particle clusters near the boundary were investigated while varying several parameters. The authors find a rich variety of patterns that are qualitatively different from those in liquids with simpler interactions. EDITORS' SUGGESTION Charge oscillations in ionic liquids: A microscopic cluster model Yael Avni, Ram M. Adar, and David Andelman Phys. Rev. E 101 , 010601(R) (2020) The microscopic model of ionic liquids presented in this work reproduces many features previously observed in experiments and simulations. The effective mean-field theory obtained from this model shows that ionic pairs lead to short-range charge oscillations near an interface and that more complex clusters can lead to long-ranged oscillations. ANNOUNCEMENT 2020 Irwin Oppenheim Award October 23, 2019 APS congratulates Eric DeGiuli as the recipient of the 2020 Irwin Oppenheim award for best paper by an early career scientist published in . His article was selected for its development of a comprehensive theory to describe the inherent states of amorphous solids. Edwards field theory for glasses and granular matter Eric DeGiuli Phys. Rev. E 98 , 033001 (2018) APS Awards Read More More News NEWS AND COMMENTARY Neural Networks Know Their Knots February 11, 2020 Neural networks correctly classify different types of knot, a problem that has stumped physicists and mathematicians. Synopsis on: Olafs Vandans, Kaiyuan Yang, Zhongtao Wu, and Liang Dai Phys. Rev. E 101 , 022502 (2020) KALEIDOSCOPE Using noisy or incomplete data to discover models of spatiotemporal dynamics January 22, 2020 Patrick A. K. Reinbold, Daniel R. Gurevich, and Roman O. Grigoriev Phys. Rev. E 101 , 010203(R) (2020) More Kaleidoscopes PRE SPOTLIGHT Human Mobility and Epidemic Dynamics Impact of travel patterns on epidemic dynamics in heterogeneous spatial metapopulation networks Shunjiang Ni and Wenguo Weng Phys. Rev. E 79 , 016111 (2009) Dengue epidemics and human mobility D. H. Barmak, C. O. Dorso, M. Otero, and H. G. Solari Phys. Rev. E 84 , 011901 (2011) Epidemic spreading induced by diversity of agents’ mobility Jie Zhou, Ning Ning Chung, Lock Yue Chew, and Choy Heng Lai Phys. Rev. E 86 , 026115 (2012) Epidemic spreading in localized environments with recurrent mobility patterns Clara Granell and Peter J. Mucha Phys. Rev. E 97 , 052302 (2018) Persistent spatial patterns of interacting contagions Li Chen Phys. Rev. E 99 , 022308 (2019) ANNOUNCEMENT New Associate Editor for - Caterina Riconda January 15, 2020 We welcome Caterina Riconda (Sorbonne University, Paris) who joins the editorial staff of . As Associate Editor, she will be handling manuscripts in the area of plasma physics. Read More More News IN THE MEDIA Mechanics-based model for the cooking-induced deformation of spaghetti See coverage of this article in the media: Yahoo! Lifestyle Ars Technica Phys.org Nathaniel N. Goldberg and Oliver M. O'Reilly Phys. Rev. E 101 , 013001 (2020) Current Issue Vol. 101, Iss. 2 — February 2020 View Current Issue Previous Issues Vol. 101, Iss. 1 — January 2020 Vol. 100, Iss. 6 — December 2019 Vol. 100, Iss. 5 — November 2019 Vol. 100, Iss. 4 — October 2019 Browse All Issues » To celebrate 50 years of enduring discoveries, APS is offering 50% off APCs for any manuscript submitted in 2020, published in selected journals. Learn More » Email Alerts Sign up to receive regular email alerts from Announcements New Associate Editor for November 4, 2019 We welcome Emily S. C. Ching (Chinese University of Hong Kong) who joins the editorial staff of . As Associate Editor, she will be handling manuscripts in the area of fluid dynamics. In Memory of Bruno Eckhardt August 27, 2019 It is with great sadness that we announce the unexpected passing of our dear colleague Bruno Eckhardt. Bruno was born March 25, 1960 and he died on August 7, 2019. He had served as Associate Editor for since 2007. More Announcements Meet The Editors Biophysical Society Meeting February 15-19 San Diego, CA Serena Bradde, Juan-José Liétor-Santos APS March Meeting March 2- 6 Denver, CO PRE Editors Trending in PRE Lattice Boltzmann model for weakly compressible flows Praveen Kumar Kolluru, Mohammad Atif, Manjusha Namburi, and Santosh Ansumali Phys. Rev. E 101 , 013309 (2020) Transition to turbulence in driven active matter Aritra Das, J.K. Bhattacharjee, and T.R. Kirkpatrick Phys. Rev. E 101 , 023103 (2020) Spatial organization of active particles with field-mediated interactions Ruben Zakine, Jean-Baptiste Fournier, and Frederic van Wijland Phys. Rev. E 101 , 022105 (2020) Feedback control of surface roughness in a one-dimensional Kardar-Parisi-Zhang growth process Priyanka, Uwe C. Tauber, and Michel Pleimling Phys. Rev. E 101 , 022101 (2020) Sign up to receive regular email alerts from More Links APS Current Issue Earlier Issues News & Announcements About this Journal Journal Staff About the Journals Join APS Authors General Information Submit a Manuscript Publication Rights Open Access Policies & Practices Tips for Authors Professional Conduct Referees General Information Submit a Report Update Your Information Policies & Practices Referee FAQ Guidelines for Referees Outstanding Referees Librarians General Information Subscriptions Online License Agreement Usage Statistics Your Account Students Physics PhysicsCentral Student Membership APS Members Subs...
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